##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index14_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	23274863	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.01244308076056	33.0	31.0	34.0	30.0	34.0
2	32.16234222302404	33.0	31.0	34.0	30.0	34.0
3	32.23247105686508	34.0	31.0	34.0	30.0	34.0
4	35.71711859270665	37.0	35.0	37.0	33.0	37.0
5	35.70378691380482	37.0	35.0	37.0	33.0	37.0
6	35.667228717952064	37.0	35.0	37.0	33.0	37.0
7	35.68417270597898	37.0	35.0	37.0	33.0	37.0
8	35.661388210963906	37.0	35.0	37.0	33.0	37.0
9	37.320509126090236	39.0	37.0	39.0	34.0	39.0
10-14	37.5250752367479	39.2	37.2	39.4	33.8	39.4
15-19	38.480249400393895	40.0	38.0	41.0	33.6	41.0
20-24	38.2716508105762	40.0	38.0	41.0	33.4	41.0
25-29	37.96329450360245	40.0	37.8	41.0	33.0	41.0
30-34	37.72978259850552	40.0	37.0	41.0	32.4	41.0
35-39	37.761755813557315	40.0	37.0	41.0	32.4	41.0
40-44	37.410663100358526	39.6	36.4	41.0	31.2	41.0
45-49	36.93027276680426	39.0	35.4	40.6	30.6	41.0
50-54	36.56987415994672	38.8	35.0	40.0	30.2	41.0
55-59	36.246787557890244	38.2	35.0	40.2	29.8	41.0
60-64	35.43269660491664	37.0	34.0	40.0	28.6	41.0
65-69	34.51351358759878	35.6	33.6	39.0	27.8	40.8
70-74	33.54325520197476	35.0	32.8	37.6	26.2	39.8
75-79	32.523215006679095	35.0	32.0	36.2	25.4	38.8
80-84	31.437966831426678	34.4	31.0	35.2	23.2	37.0
85-89	30.203556162715113	34.0	30.6	35.0	14.0	36.0
90	29.130747020938426	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	233.0
11	2457.0
12	7784.0
13	15695.0
14	25385.0
15	35007.0
16	44303.0
17	51994.0
18	60545.0
19	70383.0
20	81779.0
21	95452.0
22	110420.0
23	129773.0
24	154104.0
25	184375.0
26	221923.0
27	267341.0
28	323951.0
29	394943.0
30	484868.0
31	605934.0
32	765942.0
33	996088.0
34	1363758.0
35	1978514.0
36	3045653.0
37	4369590.0
38	4804878.0
39	2533108.0
40	48682.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.770334287252304	12.360545366045764	10.20223405826277	51.66688628843916
2	22.02941441886648	19.144283203485898	35.387075703990824	23.439226673656798
3	25.69331812772633	21.220976774714703	22.522972276386906	30.562732821172062
4	27.614702856333512	27.647904490710186	19.051582676432577	25.68580997652373
5	29.251954069453962	29.873816477361366	21.41123386231523	19.462995590869447
6	24.276332625752804	32.73792244938015	21.614458326222294	21.37128659864475
7	21.438394831576876	18.777020305470966	37.4245489870728	22.36003587587936
8	21.576577405042173	22.152034448956105	28.967914149879153	27.30347399612257
9	21.564403083224448	20.992938563643058	31.422156377570936	26.020501975561555
10-14	24.551558352986945	26.234635650207643	24.630609976899716	24.5831960199057
15-19	24.915570197563643	25.111650391490077	25.091850474464106	24.880928936482174
20-24	24.677399755091507	25.37282187705083	25.430140319717136	24.519638048140532
25-29	24.540989538505304	25.410005033607668	25.356875324858546	24.692130103028482
30-34	24.54691935980414	25.356326841989592	25.330356883905797	24.766396914300472
35-39	24.578248069556132	25.497467608243205	25.28011672890948	24.64416759329118
40-44	24.537888634782306	25.348211098695224	25.417818129950614	24.69608213657186
45-49	24.485778722472233	25.406734078234646	25.343265904578814	24.764221294714307
50-54	24.495574954475803	25.49739898139127	25.38957749014897	24.617448573983957
55-59	24.518246955005385	25.439290847487232	25.334759260904864	24.70770293660252
60-64	24.440792915425316	25.459179731190268	25.437337926557092	24.662689426827324
65-69	24.44801652230378	25.5737323514794	25.425095139399552	24.553155986817274
70-74	24.52355081900884	25.50753132228241	25.33195202704801	24.63696583166074
75-79	24.50038178011619	25.462929499193226	25.400557170118987	24.636131550571598
80-84	24.45729543322391	25.598435817720684	25.399651784630194	24.544616964425213
85-89	24.559214779383076	25.57436965031193	25.292249750166455	24.574165820138532
90	24.289832324185472	25.669442423016985	25.490192877048663	24.55053237574888
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.43722057569147
2	45.468641092523285
3	56.256050948898384
4	53.30051283285724
5	48.714949660323406
6	45.64761922439756
7	43.798430707456234
8	48.88005140116474
9	47.584905058786006
10-14	49.134754372892644
15-19	49.79649913404582
20-24	49.197037803232035
25-29	49.23311964153378
30-34	49.313316274104615
35-39	49.22241566284731
40-44	49.233970771354166
45-49	49.250000017186544
50-54	49.113023528459756
55-59	49.225949891607904
60-64	49.10348234225264
65-69	49.001172509121055
70-74	49.16051665066958
75-79	49.136513330687784
80-84	49.00191239764912
85-89	49.13338059952161
90	48.840364699934355
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	11.0
1	8.5
2	4.0
3	4.0
4	9.0
5	12.0
6	17.5
7	26.5
8	39.0
9	58.5
10	69.0
11	114.0
12	187.0
13	283.0
14	456.0
15	764.5
16	1333.0
17	2186.5
18	3786.5
19	6796.5
20	8695.0
21	11730.0
22	19790.5
23	32016.5
24	48730.0
25	71174.5
26	99644.0
27	135326.0
28	174600.0
29	216724.5
30	239719.0
31	261903.5
32	307323.0
33	357686.5
34	412318.0
35	465156.0
36	520136.0
37	580366.5
38	633757.5
39	679309.5
40	702056.0
41	717867.5
42	748670.0
43	775506.0
44	791206.0
45	798442.0
46	797709.0
47	791889.0
48	790688.5
49	790687.0
50	790180.0
51	783341.0
52	775471.0
53	764083.5
54	757612.5
55	758099.5
56	746716.0
57	731387.0
58	709218.0
59	679385.5
60	664378.0
61	647782.0
62	610482.5
63	562642.0
64	507259.5
65	452148.5
66	393338.0
67	330708.0
68	273985.5
69	221335.5
70	194723.0
71	170274.0
72	125787.0
73	89360.5
74	59634.5
75	36571.5
76	21043.5
77	11295.5
78	5326.5
79	2346.0
80	1389.0
81	977.5
82	411.5
83	184.0
84	81.5
85	44.0
86	28.0
87	16.5
88	9.5
89	6.0
90	6.0
91	5.5
92	4.5
93	3.0
94	2.0
95	1.5
96	1.5
97	1.0
98	0.0
99	1.0
100	2.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.017026953069498196
3	0.03816993466298814
4	0.04703787085664049
5	0.05155776856774624
6	0.0050999226074928995
7	0.01990129866715005
8	0.016305144309549748
9	0.013972155281859232
10-14	0.019333303916762044
15-19	0.008757086991231698
20-24	0.0044150635816846695
25-29	0.002158551910702976
30-34	0.004502711788249839
35-39	0.001817411342013055
40-44	8.713262887949116E-4
45-49	0.003590998580743526
50-54	4.1589933311315296E-4
55-59	0.0032206419431985486
60-64	9.85612675786749E-4
65-69	0.004357490740117353
70-74	0.004503571084392634
75-79	0.008776850802516
80-84	0.006724851613519702
85-89	0.006731725982662067
90	0.0026036673126711854
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.3274863E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.104272000464036
#Duplication Level	Relative count
1	100.0
2	30.940494997367036
3	16.349657714586623
4	10.431806213796735
5	7.105845181674566
6	5.3364928909952605
7	3.962085308056872
8	3.2648762506582414
9	2.7140600315955767
10++	30.5318588730911
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
AAAAA	6148340	3.010153	4.8768654	2
CCAGG	4907685	2.5991325	5.338411	1
CCTGG	4891860	2.5812654	6.17818	1
GAAGA	4940750	2.5576394	5.100403	2
CTTCT	5083100	2.5181727	5.5879564	1
CTGGA	4689485	2.446421	8.887749	1
TCCAG	4600915	2.3609953	5.6829205	2
CTGCT	4585595	2.3445177	5.0371275	1
CTCCT	4598915	2.3129065	7.648126	1
CTGGG	4282205	2.2971075	8.493633	1
CAGGA	4263910	2.2325807	5.5607576	1
CCCAG	4215750	2.1961977	7.2721906	1
CTTCA	4407290	2.1913996	5.65084	1
CTCCA	4326340	2.1838176	8.1091795	1
CAGAA	4132055	2.1040564	5.205046	1
CTCTG	4012320	2.051414	6.240108	1
CTGGC	3572810	1.8852485	5.43689	1
TGGAA	3608080	1.8609277	5.2840652	2
CTGAA	3644580	1.8490373	5.4657574	1
CTCAG	3400585	1.7450366	6.072991	1
CTTTG	3381615	1.7030843	5.015934	1
CTGGT	3202670	1.6646583	5.169319	1
CTTGG	3135590	1.629792	5.290945	1
>>END_MODULE
